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31
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A minimal and self-consistent<i>in silico</i>cell model based on macromolecular interactions
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Flamm, Christoph;
Endler, Lukas;
Mü
ller, Stefan;
Widder, Stefanie;
Schuster, Peter;
Theoretical Biochemistry Group, Institut fü
r Theoretische Chemie, Universitä
t WienWä
hringerstraße 17, 1090 Wien, Austria;
Theoretical Biochemistry Group, Institut fü
r Theoretische Chemie, Universitä
t WienWä
hringerstraße 17, 1090 Wien, Austria;
Johann Radon Institute for Computational and Applied Mathematics, Austrian Academy of SciencesAltenbergerstraße 69, 4040 Linz, Austria;
Theoretical Biochemistry Group, Institut fü
r Theoretische Chemie, Universitä
t WienWä
hringerstraße 17, 1090 Wien, Austria;
Theoretical Biochemistry Group, Institut fü
r Theoretische Chemie, Universitä
t WienWä
hringerstraße 17, 1090 Wien, Austria;
(Philosophical transactions. Biological sciences,
v.362,
2007,
pp.1831-1839)
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32
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Navigating the Chemical Space of HCN Polymerization and Hydrolysis: Guiding Graph Grammars by Mass Spectrometry Data
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Andersen, Jakob;
Andersen, Tommy;
Flamm, Christoph;
Hanczyc, Martin;
Merkle, Daniel;
Stadler, Peter;
Department of Mathematics and Computer Science, University of Southern Denmark, Odense M DK-5230, Denmark;
Institute of Physics, Chemistry and Pharmacy, University of Southern Denmark, Odense M DK-5230, Denmark;
Institute for Theoretical Chemistry, University of Vienna, Wien A-1090, Austria;
Institute of Physics, Chemistry and Pharmacy, University of Southern Denmark, Odense M DK-5230, Denmark;
Department of Mathematics and Computer Science, University of Southern Denmark, Odense M DK-5230, Denmark;
Max Planck Institute for Mathematics in the Sciences, Leipzig D-04103, Germany;
(Entropy,
v.15,
2013,
pp.4066-4083)
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33
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A generalized model of the repressilator
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Mü
ller, Stefan;
Hofbauer, Josef;
Endler, Lukas;
Flamm, Christoph;
Widder, Stefanie;
Schuster, Peter;
;
(Journal of mathematical biology,
v.53,
2006,
pp.905-937)
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34
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Atom mapping with constraint programming
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Mann, Martin;
Nahar, Feras;
Schnorr, Norah;
Backofen, Rolf;
Stadler, Peter F;
Flamm, Christoph;
Bioinformatics Group, Department of Computer Science, University of Freiburg, Georges-Koehler-Allee 106, Freiburg, 79110 Germany;
Bioinformatics Group, Department of Computer Science, University of Freiburg, Georges-Koehler-Allee 106, Freiburg, 79110 Germany;
Bioinformatics Group, Department of Computer Science, University of Freiburg, Georges-Koehler-Allee 106, Freiburg, 79110 Germany;
Bioinformatics Group, Department of Computer Science, University of Freiburg, Georges-Koehler-Allee 106, Freiburg, 79110 Germany;
Institute for Theoretical Chemistry, University of Vienna, Wä
hringerstrasse 17, Vienna, 1090 Austria;
Institute for Theoretical Chemistry, University of Vienna, Wä
hringerstrasse 17, Vienna, 1090 Austria;
(Algorithms for molecular biology AMB,
v.9,
2014,
pp.23)
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35
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Design of multistable RNA molecules
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FLAMM CHRISTOPH;
HOFACKER IVO L.;
MAURER-STROH SEBASTIAN;
STADLER PETER F.;
ZEHL MARTIN;
;
(RNA,
v.7,
2001,
pp.254-265)
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36
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Analyses of 40 kDa peginterferon alfa-2A (Pegasys®) in combination with ribavirin, mycophenolate mofetil, amantadine, or amantadine plus ribavirin in patients that relapsed or did not respond to rebetron™ therapy: a report of two randomized, multicenter, efficacy and safety studies : Nezam Afdhal, Beth Israel Deaconess Medical Ctr, Boston, MA; Steven Flamm, Northwestern Memorial Hospital, Chicago, IL; Joanne C Imperial, Stanford University School of Medicine, Palo Alto, CA; Peter F Malet, University of Texas Southwestern Medical Center, Dallas, TX; Myron Tong, Hungtington Hospital Liver Center, Pasadena, CA; Steven K Herrine, Thomas Jefferson University Hospital, Philadelphia, PA; Robert Brown Jr., Columbia Presbyterian Medical Center, New York, NY; Stephen Esposito, Hepatobiliary Associates of New York, Bayside, NY; David E Bernstein, North Shore University Hospital, Manhasset, NY; Jennifer L Campagna, Roche Laboratories Inc, Nutley, NJ
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;
;
(Hepatology : official journal of the American Association for the Study of Liver Diseases,
v.34,
2001,
pp.A243-A243)
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37
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Pathway Realizability in Chemical Networks
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Andersen, Jakob L.;
Banke, Sissel;
Fagerberg, Rolf;
Flamm, Christoph;
Merkle, Daniel;
Stadler, Peter F.;
Department of Mathematics and Computer Science, University of Southern Denmark, Odense M, Denmark.;
Department of Mathematics and Computer Science, University of Southern Denmark, Odense M, Denmark.;
Department of Mathematics and Computer Science, University of Southern Denmark, Odense M, Denmark.;
Institute for Theoretical Chemistry, University of Vienna, Wien, Austria.;
Algorithmic Cheminformatics Group, Faculty of Technology, Bielefeld University, Bielefeld, Germany.;
Institute for Theoretical Chemistry, University of Vienna, Wien, Austria.;
(Journal of computational biology : a journal of computational molecular cell biology,
v.32,
2025,
pp.164-187)
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38
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BarMap: RNA folding on dynamic energy landscapes
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Hofacker, Ivo L.;
Flamm, Christoph;
Heine, Christian;
Wolfinger, Michael T.;
Scheuermann, Gerik;
Stadler, Peter F.;
;
(RNA,
v.16,
2010,
pp.1308-1316)
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39
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Using Delta-Generalized Additive Models to Predict Spatial Distributions and Population Abundance of Juvenile Pink Shrimp in Tampa Bay, Florida
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Rubec, Peter J.;
Kiltie, Richard;
Leone, Erin;
Flamm, Richard O.;
McEachron, Luke;
Santi, Christi;
Florida Fish and Wildlife Conservation Commission, 100 8th Avenue Southeast, St. Petersburg, Florida, 33701, USA;
Florida Fish and Wildlife Conservation Commission, 1105 Southwest Williston Road, Gainesville, Florida, 32601, USA;
Florida Fish and Wildlife Conservation Commission, 1105 Southwest Williston Road, Gainesville, Florida, 32601, USA;
Florida Fish and Wildlife Conservation Commission, 100 8th Avenue Southeast, St. Petersburg, Florida, 33701, USA;
Florida Fish and Wildlife Conservation Commission, 100 8th Avenue Southeast, St. Petersburg, Florida, 33701, USA;
Florida Fish and Wildlife Conservation Commission, 100 8th Avenue Southeast, St. Petersburg, Florida, 33701, USA;
(Marine and coastal fisheries dynamics, management , and ecosystem science,
v.8,
2016,
pp.232-243)
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40
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A Topological Approach to Chemical Organizations
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Benkö
, Gil;
Centler, Florian;
Dittrich, Peter;
Flamm, Christoph;
Stadler, Bä
rbel M. R.;
Stadler, Peter F.;
Contact author.;
Bio Systems Analysis Group, Jena Center for Bioinformatics and Department of Mathematics and Computer Science, Friedrich Schiller University Jena, D-07743 Jena, Germany.(P.D.);
Bio Systems Analysis Group, Jena Center for Bioinformatics and Department of Mathematics and Computer Science, Friedrich Schiller University Jena, D-07743 Jena, Germany.(P.D.);
Bioinformatics Group, Department of Computer Science, and Interdisciplinary Center for Bioinformatics, University of Leipzig, Hä
rtelstraße 16-18, D-04107 Leipzig, Germany.(G.B.);
(C.F.);
(P.F.S.);
Max Planck Institute for Mathematics in the Sciences, Inselstrasse 22, D-04103, Leipzig, Germany.;
Bioinformatics Group, Department of Computer Science, and Interdisciplinary Center for Bioinformatics, University of Leipzig, Hä
rtelstraße 16-18, D-04107 Leipzig, Germany.(G.B.);
(C.F.);
(P.F.S.);
(Artificial life,
v.15,
2009,
pp.71-88)